This past year I got involved with Software Carpentry, a group which teaches basic research computing to scientists. I’ve helped Stephen Turner teach a few RNA-Seq workshops through UVA’s BioConnector, and last March I taught my first independent-from-Stephen workshop with two other UVA instructors, Alex Koeppel and Zhuo Fu.
At first we decided to keep meeting in order to review and debug each other’s code, but then I had a brainwave. Perhaps we could work on an independent project together?
As part of my position at Public Health Sciences I work with both the Center for Public Health Genomics (CPHG) and the Institute of Law, Psychiatry and Public Policy (ILPPP). The specific project that I work on involves analyzing court data pertaining to mental health proceedings in the State of Virginia. It’s a very different domain from my other bioinformatics work, but it ends up being a perfect fit as a project to cut our teeth on app construction with R. The data tables are fairly straightforward, even if deeper understanding requires further domain knowledge. Also, there would be actual immediate public policy benefits to having interactive and layered representations of the data. (e.g. allowing lawmakers to see up-to-date graphs of commitment trends in their specific districts.)
I’ll keep both of my readers up to date on our project as it takes shape!